Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs4330650 chr8:91684009 C/T cg16814680 chr8:91681699 NA -1.14 -30.91 -0.85 9.22E-106 Box Plot
BLCA rs4332092 chr8:91677926 G/A cg16814680 chr8:91681699 NA -1.2 -36.65 -0.88 8.17E-127 Box Plot
BLCA rs4335090 chr8:91686873 A/G cg16814680 chr8:91681699 NA -1.19 -36.24 -0.88 2.33E-125 Box Plot
BLCA rs4335091 chr8:91684256 C/T cg16814680 chr8:91681699 NA -1.19 -36.24 -0.88 2.33E-125 Box Plot
BLCA rs4338064 chr8:91682498 T/C cg16814680 chr8:91681699 NA -1.19 -36.24 -0.88 2.33E-125 Box Plot
BLCA rs4340581 chr2:99725025 C/T cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.36 0.86 5.8E-115 Box Plot
BLCA rs4376466 chr8:91688402 G/T cg16814680 chr8:91681699 NA 1.18 34.51 0.87 3.71E-119 Box Plot
BLCA rs4377923 chr8:91678515 T/G cg16814680 chr8:91681699 NA -1.17 -31.93 -0.85 1.27E-109 Box Plot
BLCA rs4377924 chr8:91678575 T/C cg16814680 chr8:91681699 NA -1.2 -36.65 -0.88 8.17E-127 Box Plot
BLCA rs4442097 chr8:91692995 A/G cg16814680 chr8:91681699 NA 1.14 30.43 0.84 6.58E-104 Box Plot
BLCA rs4606020 chr8:91699733 T/C cg16814680 chr8:91681699 NA -1.15 -32.06 -0.85 3.93E-110 Box Plot
BLCA rs4623371 chr8:91682497 A/C cg16814680 chr8:91681699 NA -1.19 -36.24 -0.88 2.33E-125 Box Plot
BLCA rs4637779 chr8:91691631 G/A cg16814680 chr8:91681699 NA -1.14 -31.29 -0.85 3.48E-107 Box Plot
BLCA rs4642598 chr8:91678587 A/G cg16814680 chr8:91681699 NA -1.2 -36.65 -0.88 8.17E-127 Box Plot
BLCA rs4735306 chr8:91684864 T/A cg16814680 chr8:91681699 NA -1.19 -36.24 -0.88 2.33E-125 Box Plot